Biedrzycki, Rafał ; Arabas, Jarosław
Korbicz, Józef - red. ; Uciński, Dariusz - red.
This paper presents an application of methods from the machine learning domain to solving the task of DNA sequence recognition. We present an algorithm that learns to recognize groups of DNA sequences sharing common features such as sequence functionality. We demonstrate application of the algorithm to find splice sites, i.e., to properly detect donor and acceptor sequences ; We compare the results with those of reference methods that have been designed and tuned to detect splice sites. We also show how to use the algorithm to find a human readable model of the IRE (Iron-Responsive Element) and to find IRE sequences. The method, although universal, yields results which are of quality comparable to those obtained by reference methods. In contrast to reference methods, this approach uses models that operate on sequence patterns, which facilitates interpretation of the results by humans.
Zielona Góra: Uniwersytet Zielonogórski
AMCS, Volume 22, Number 3 (2012) ; click here to follow the link
Biblioteka Uniwersytetu Zielonogórskiego
Sep 8, 2021
Sep 10, 2018
|KIS: an automated attribute induction method for classification of DNA sequences||Sep 8, 2021|
Kryazhimskii, Arkadii Triggiani, Roberto- ed. Maksimov, Vyacheslav I. - ed.
Świniarski, Roman W. Grzymala-Busse, Jerzy - ed. Świniarski, Roman W. - ed. Zhong, Ning - ed. Ziarko, Wojciech - ed.
Duch, Włodzislaw Adamczak, Rafał Diercksen, Geerd H.F. Rutkowska, Danuta - ed. Zadeh, Lotfi A. - ed.
Trabucho, Luis Sofonea, Mircea - ed. Viano, Juan M. - ed.
Nowicki, Robert K. Korbicz, Józef - red. Uciński, Dariusz - red.
Świercz, Ewa Korbicz, Józef - red. Uciński, Dariusz - red.
Michalak, Krzysztof Kwaśnicka, Halina Korbicz, Józef - red. Uciński, Dariusz - red.
Ferenz, Krystyna Kataryńczuk-Mania, Lidia - red. nauk. Pasterniak-Kobyłecka, Ewa - red nauk.